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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
Class
Cancers
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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249 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA4
ENSSSCG00000006890
ENSG00000198691
ATP binding cassette subfamily A member 4
Tissue enriched
Detected in some
retina:
95.8
ADAMTS17
ENSSSCG00000038452
ENSG00000140470
ADAM metallopeptidase with thrombospondin type 1 motif 17
Tissue enriched
Detected in many
lens:
63.4
ADAMTS18
ENSSSCG00000038627
ENSG00000140873
ADAM metallopeptidase with thrombospondin type 1 motif 18
Tissue enriched
Detected in many
lens:
62.4
ADGRF4
ENSSSCG00000022089
ENSG00000153294
Adhesion G protein-coupled receptor F4
Tissue enriched
Detected in some
cornea:
43.3
AIPL1
ENSSSCG00000022026
ENSG00000129221
Aryl hydrocarbon receptor interacting protein like 1
Tissue enriched
Detected in some
retina:
79.2
ALDH3A1
ENSSSCG00000018044
ENSG00000108602
Aldehyde dehydrogenase 3 family member A1
Tissue enriched
Detected in some
cornea:
707.1
ANKRD33
ENSSSCG00000000231
ENSG00000167612
Ankyrin repeat domain 33
Tissue enriched
Detected in some
retina:
39.0
APBA3
ENSSSCG00000013492
ENSG00000011132
Amyloid beta precursor protein binding family A member 3
Tissue enriched
Detected in all
lens:
86.9
ARHGAP12
ENSSSCG00000011026
ENSG00000165322
Rho GTPase activating protein 12
Tissue enriched
Detected in all
lens:
120.9
ARNTL2
ENSSSCG00000000551
ENSG00000029153
Aryl hydrocarbon receptor nuclear translocator like 2
Tissue enriched
Detected in many
lens:
77.3
ARR3
ENSSSCG00000012379
ENSG00000120500
Arrestin-C
Tissue enriched
Detected in single
retina:
137.5
ARVCF
ENSSSCG00000010133
ENSG00000099889
ARVCF, delta catenin family member
Tissue enriched
Detected in all
lens:
141.1
BECN2
ENSSSCG00000010868
ENSG00000196289
Beclin 2
Tissue enriched
Detected in some
cornea:
5.0
BFSP1
ENSSSCG00000007084
ENSG00000125864
Beaded filament structural protein 1
Tissue enriched
Detected in some
lens:
933.0
BFSP2
ENSSSCG00000011636
ENSG00000170819
Beaded filament structural protein 2
Tissue enriched
Detected in single
lens:
638.0
BHLHE23
ENSSSCG00000031937
ENSG00000125533
Basic helix-loop-helix family member e23
Tissue enriched
Detected in some
retina:
18.7
BMT2
ENSSSCG00000021466
ENSG00000164603
Base methyltransferase of 25S rRNA 2 homolog
Tissue enriched
Detected in all
lens:
70.1
CACNA1F
ENSSSCG00000012298
ENSG00000102001
Calcium voltage-gated channel subunit alpha1 F
Tissue enriched
Detected in some
retina:
42.1
CAPRIN2
ENSSSCG00000022611
ENSG00000110888
Caprin family member 2
Tissue enriched
Detected in many
lens:
196.8
CARHSP1
ENSSSCG00000026710
ENSG00000153048
Calcium regulated heat stable protein 1
Tissue enriched
Detected in all
lens:
154.8
CCNG1
ENSSSCG00000017024
ENSG00000113328
Cyclin-G1
Tissue enriched
Detected in all
lens:
343.5
CDPF1
ENSSSCG00000000005
ENSG00000205643
Cysteine rich DPF motif domain containing 1
Tissue enriched
Detected in all
lens:
67.8
CELF1
ENSSSCG00000013233
ENSG00000149187
CUGBP Elav-like family member 1
Tissue enriched
Detected in all
lens:
174.0
CFAP20
ENSSSCG00000002805
ENSG00000070761
Cilia- and flagella-associated protein 20
Tissue enriched
Detected in all
lens:
56.2
CKS1B
ENSSSCG00000006538
ENSG00000160688
Cyclin-dependent kinases regulatory subunit 1
Tissue enriched
Detected in all
lens:
165.1
CLIC5
ENSSSCG00000037416
ENSG00000112782
Chloride intracellular channel 5
Tissue enriched
Detected in many
lens:
235.3
CNGA1
ENSSSCG00000038160
ENSG00000198515
Cyclic nucleotide gated channel alpha 1
Tissue enriched
Detected in some
retina:
72.5
CNGB1
ENSSSCG00000002811
ENSG00000070729
Cyclic nucleotide gated channel beta 1
Tissue enriched
Detected in some
retina:
71.5
COL4A5
ENSSSCG00000012572
ENSG00000188153
Collagen type IV alpha 5 chain
Tissue enriched
Detected in many
lens:
107.3
COTL1
ENSSSCG00000037645
ENSG00000103187
Coactosin like F-actin binding protein 1
Tissue enriched
Detected in many
lens:
185.6
CPEB1
ENSSSCG00000001808
Cytoplasmic polyadenylation element-binding protein 1
Tissue enriched
Detected in many
lens:
70.9
CPLX3
ENSSSCG00000001895
ENSG00000213578
Complexin 3
Tissue enriched
Detected in some
retina:
81.8
CRB1
ENSSSCG00000021897
ENSG00000134376
Crumbs 1, cell polarity complex component
Tissue enriched
Detected in some
retina:
41.3
CRTAC1
ENSSSCG00000010530
ENSG00000095713
Cartilage acidic protein 1
Tissue enriched
Detected in some
cornea:
236.9
CRYAB
ENSSSCG00000036724
ENSG00000109846
Alpha-crystallin B chain
Tissue enriched
Detected in many
lens:
2223.0
CRYBA1
ENSSSCG00000040641
ENSG00000108255
Crystallin beta A1
Tissue enriched
Detected in single
lens:
2538.5
CRYBA2
ENSSSCG00000040776
ENSG00000163499
Crystallin beta A2
Tissue enriched
Detected in single
lens:
694.3
CRYBB1
ENSSSCG00000009964
ENSG00000100122
Beta-crystallin B1
Tissue enriched
Detected in single
lens:
1037.4
CRYBB2
ENSSSCG00000009955
ENSG00000244752
Crystallin beta B2
Tissue enriched
Detected in single
lens:
2196.1
CRYBB3
ENSSSCG00000009954
ENSG00000100053
Crystallin beta B3
Tissue enriched
Detected in single
lens:
1634.4
CRYGB
ENSSSCG00000039241
ENSG00000182187
Crystallin gamma B
Tissue enriched
Detected in single
lens:
2488.8
CRYGC
ENSSSCG00000039620
ENSG00000163254
Crystallin gamma C
Tissue enriched
Detected in single
lens:
868.5
CRYGD
ENSSSCG00000034967
ENSG00000118231
Crystallin gamma D
Tissue enriched
Detected in single
lens:
206.4
CRYGN
ENSSSCG00000038413
ENSG00000127377
Crystallin gamma N
Tissue enriched
Detected in single
lens:
78.6
CRYGS
ENSSSCG00000040431
ENSG00000213139
Crystallin gamma S
Tissue enriched
Detected in single
lens:
824.8
CRYZ
ENSSSCG00000003780
ENSG00000116791
Quinone oxidoreductase
Tissue enriched
Detected in all
lens:
275.6
DCLK3
ENSSSCG00000011241
ENSG00000163673
Doublecortin like kinase 3
Tissue enriched
Detected in many
lens:
53.8
DEFB1
ENSSSCG00000027555
Beta-defensin 1
Tissue enriched
Detected in some
lens:
244.7
DHDH
ENSSSCG00000003158
ENSG00000104808
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase
Tissue enriched
Detected in many
lens:
112.6
DNASE2B
ENSSSCG00000026532
ENSG00000137976
Deoxyribonuclease 2 beta
Tissue enriched
Detected in some
lens:
185.4
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